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Join one of Eastern Europe's biggest summer schools in Computational Genomics and Bioinformatics!

This summer in Poland connect, learn, and innovate with leading experts in the field.
Don’t miss this chance to deepen your knowledge and expand your network!

Discover more

Schedule

Find out what’s waiting for you!

Day 5

Friday, July 11

Transcriptomics

MCB Auditorium
Ground Floor

Chairman

Daryna-Yakymenko-
Host

Daryna Yakymenko

Sylwia Bożek
Host

Sylwia Bożek

Daily Announcements
  • 9:00 – 9:15
Using bioinformatics for basic research on animal evolution and development
  • 9:15 – 9:45
  • Dr Guillem Ylla, FBBB UJ, Poland
The Power of One: Decoding Biology with Single-Cell Transcriptomics
  • 9:45 – 10:15
  • Dr Krzysztof Szade, FBBB UJ, Poland
Coffee Break
  • 10:15 – 10:30
Pathway Enrichment Demystified: The Art of Biological Interpretation algorithms
  • 10:30 – 11:00
  • Dr Joanna Żyła, Silesian University of Technology, Poland
Antarctic Microbiomes: Extremophiles and Ecological Insights
  • 11:00 – 11:30
  • Dr Mariia Pavlovska, Vernadsky Antarctic Station, Ukraine
Lunch
  • 11:30 – 12:30
Transcriptomics data analysis

Hand-On Workshop

  • 12:30 – 14:30
  • Dr Tomasz Gaczorek, FBBB UJ, Poland
Coffee Break
  • 14:30 – 14:45
Transcriptomics data analysis

Hand-On Workshop

  • 14:45 – 16:15
  • Dr Tomasz Gaczorek, FBBB UJ, Poland
Conference Wrap-Up & Closing Remarks

Panel Discussion

  • 16:15 – 16:30
  • Organizing Committee
Certificate Award Ceremony & Farewell
  • 16:30 – 17:00
Day 6

Saturday, July 12

Nvidia Workshop

MCB Auditorium
Ground Floor

Chairman

M_sikora
Host

dr Mateusz Sikora

Places are limited. Separate registration is required. Register here

Speeding up glycoprotein modeling
from coarse-grained models to glycan grafting
  • 9:00 – 9:45
  • Dr Mateusz Sikora, MCB UJ, Poland
nVidia workshop - Building LLM Applications With Prompt Engineering

Registration is required: Register here

  • 9:45 – 10:30
  • Dr Jan Kwapisz, nVidia Ambassador
Coffee Break
  • 10:30 – 11:00
nVidia workshop - Building LLM Applications With Prompt Engineering
  • 11:00 – 13:00
  • Dr Jan Kwapisz, nVidia Ambassador
Lunch Break
  • 13:00 – 14:00
nVidia workshop - Building LLM Applications With Prompt Engineering
  • 14:00 – 16:00
  • Dr Jan Kwapisz, nVidia Ambassador
Day 1

Monday, July 7

Frontiers in Computational Biology

MCB Auditorium
Ground Floor

Chairman

38f17e66-4044-4540-b515-82f2d35491aa
Host

dr Paweł Łabaj

Registration
  • 9:00 – 9:30
Welcome & Opening Remarks

MCB Director, Local Organizing Committee

  • 9:30 – 9:45
  • dr Danuta Earnshaw Mossakowska

Quo Vadis - Genomics and Bioinformatics in Eastern and Central Europe
  • 9:45 – 10:15
  • Prof. Taras Oleksyk, Oakland University, USA

Evolutionary modeling and molecular adaptation
  • 10:15 – 10:45
  • Dr. Alexander Lucaci, Weill Cornel Medicine, USA
Coffee Break
  • 10:45 – 11:00

Where Computer Science Meets Chemistry:
The Computational Revolution in Drug Design
  • 11:00 – 11:30
  • Dr Sabina Podlewska, IF PAN, Poland
Genomic reproducibility in the bioinformatics era
  • 11:30 – 12:00
  • Prof. Paweł P. Łabaj
Lunch
  • 12:00 – 13:00
Galaxy Platform for Genome Annotation and Analysis

Hands-On Workshop | https://gxy.io/eebg25

  • 13:00 – 15:00
  • Dr. Anton Nekrutenko, Penn State, USA
Coffee Break
  • 15:00 – 15:15
Galaxy Platform for Genome Annotation and Analysis

Hands-On Workshop | https://gxy.io/eebg25

  • 15:15 – 16:45
  • Dr. Anton Nekrutenko, Penn State, USA
Wrap-Up & Discussion
  • 16:45 – 17:15
Day 2

Tuesday, July 8

Metagenomics

MCB Auditorium
Ground Floor

Chairman

c9182f3c-9d29-42db-8d37-763b2d03899a
Host

Prof. Taras K. Oleksyk

Daily Announcements
  • 9:00 – 9:15
The role of the gut microbiome in precision medicine
  • 9:15 – 9:45
  • Dr Tomasz Kościółek, Sano Science, Poland
Towards protein based analysis of metagenomic data
  • 9:45 – 10:15
  • Dr Jakub Wojciechowski, Sano Science, Poland
Coffee Break
  • 10:15 – 10:30
Healthy microbiome—moving towards functional interpretation

Workshop Script (Commands) Workshop Data Files

  • 10:30 – 11:00
  • Dr Kinga Zielińska, MCB UJ, Poland

City microbiome - MetaSUB Consortium
  • 11:00 – 11:30
  • Dr Alexander Lucaci, Weill Cornel Medicine, N.Y., USA
Lunch
  • 11:30 – 12:30
Metagenomics data analysis

Workshop Script (Commands) Workshop Data Files

  • 12:30 – 14:30
  • Dr. Kinga Zielińska, MCB UJ
Coffee Break
  • 14:30 – 14:45
Metagenomics data analysis

Workshop Script (Commands) Workshop Data Files

  • 14:45 – 16:30
  • Dr. Kinga Zielińska, MCB UJ
Wrap-Up & Discussion
  • 16:30 – 17:00
Day 3

Wednesday, July 9

Personalized Medicine

MCB Auditorium
Ground Floor

Chairman

Joanna Polańska
Host

Prof. Joanna Polańska

Daily Announcements
  • 9:00 – 9:15
The Genome of Europe and Implementation of Genetic Information
in Healthcare and Prevention
  • 9:15 – 10:00
  • Prof. Andre Uitterlinden, Erasmus MC, The Netherlands
Novel Omics Approaches to Genome Annotation
and Personalized Medicine
  • 10:00 – 10:45
  • Prof. Ugur Sezerman, Acibadem University, Turkey
Coffee Break
  • 10:45 – 11:00
Precision medicine in neuromuscular disorders - can we help?
  • 11:00 – 11:45
  • Prof. Joanna Polańska, Silesian University of Technology, Poland
Personalized Medicine with Digital-Twin​
  • 11:45 – 12:30
  • Prof. Joaquin Dopazo, Andalusian Public Foundation Progress and Health, Spain
AI-assisted genome diagnostics for rare diseases and cancer
  • 12:30 – 13:15
  • Prof. Stephan Ossowski, University of Tübingen, Germany
Lunch
  • 13:15 – 14:15
Phylogenomics Using Geneious Software

This workshop requires participants to install the 30-day trial version of Geneious Prime in advance.
Download the software here: https://www.geneious.com/free-trial
Full setup instructions provided by the instructor: Download PDF
Please make sure the software is installed and activated before the session.

  • 14:15 – 15:45
  • Dr. Audrey Majeske, Oakland University, USA
Coffee Break
  • 15:45 – 16:00
Phylogenomics Using Geneious Software

This workshop requires participants to install the 30-day trial version of Geneious Prime in advance.
Download the software here: https://www.geneious.com/free-trial
Full setup instructions provided by the instructor: Download PDF
Please make sure the software is installed and activated before the session.

  • 16:00 – 18:00
  • Dr. Audrey Majeske, Oakland University, USA
Wrap-Up & Discussion
  • 18:00 – 18:15
ONT conference dinner sponsored by Biomedica

View restaurant location on Google Maps

Day 4

Thursday, July 10

ONT Day

MCB Auditorium
Ground Floor

Chairman

c9182f3c-9d29-42db-8d37-763b2d03899a
Host

Prof. Taras K. Oleksyk

Daily Announcements
  • 9:00 – 9:15
Augmenting the Transcriptional Landscape in Disease
with Targeted Long-Reads Sequencing
  • 9:15 – 9:45
  • Prof. Paweł Łabaj, MCB UJ, Poland
Technology, applications and innovations of Nanopore sequencing
  • 9:45 – 10:30
  • Dr. Sebastian Ganschow, ONT
Coffee Break
  • 10:30 – 10:45
 Data analysis with ONT sequencing data
  • 10:45 – 11:30
  • Andreas Klingenhoff, ONT
Lunch
  • 11:30 – 12:30
Oxford Nanopore Technologies data nalysis

Hands-On Workhop

  • 12:30 – 14:30
  • Andreas Klingenhoff, ONT
Coffee Break
  • 14:30 – 14:45
Workshop Continuation & Discussion

Hands-On Workhop

  • 14:45 – 16:30
Wrap-Up & Discussion
  • 16:30 – 17:00